I am running this decoupler function which prints out a network using sources and targets of curated collection of TFs and their transcriptional targets. I have used Collectri as the collection (net), however I am not able to obtain the interactions between the sources and targets.
This is the tutorial I have followed: https://decoupler-py.readthedocs.io/en/latest/notebooks/dorothea.html
This is the function and parameters I am using:
#curated collection of TFs and their transcriptional targets
net = dc.get_collectri(organism='human', split_complexes=False)
dc.plot_network(
net=net,
n_sources=['PAX5', 'EBF1', 'RFXAP'],
n_targets=15,
node_size=100,
s_cmap='white',
t_cmap='white',
c_pos_w='darkgreen',
c_neg_w='darkred',
figsize=(5, 5)
)
And this is the output I get:
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