Relative Content

Tag Archive for pythonglobsnakemake

Define input files for snakemake using glob

I am building a snakemake pipeline for some bioinformatics analyses, and I’m a beginner with the tool. The end users will be mainly biologists with little to no IT training, so I’m trying to make it quite user-friendly, in particular not needing much information in the config file (a previous bioinformatician in the institute had built a more robust pipeline but that required a lot of information in the config file, and it fell into disuse).