How can I remove or avoid overlapping nodes in a cytoscape network?
I need help to avoid overlapping nodes in a network in Cytoscape since there are so many that it becomes difficult to do it manually. I have used some layouts but they do not avoid overlapping, genemania manages to separate them but it is not how I would like the network drawn.
How to visualize Similarity score matrix with CoNet app of Cytoscape
i got a similarity score matrix by using CCREPE package on R. I would like to visualize the co-occurence by using the app CoNet from Cytoscape.
Everytime i upload the .TSV matrix and .TSV p-values, i got an error
CYTOSCAPE ClueGO Functional analysis ERROR
It’s my first time to use ClueGO and I encountered some problems when using CLUEGO. I don’t know where the problem occurs and I don’t know how to solve it. The picture below is the specific information of the problem I encountered!I don’t know if this problem is caused by me not having a license.enter image description hereenter image description hereenter image description here
Is there a way to increase the automatic label text size in Cytoscape?
I have made this network on Cytoscape using the Omics Visualizer App, but now I want to decrease the size of the nodes/circles and increase the size of the gene name label. I am also using the Desktop Windows version of the software. How can I do this?
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