After starting bioinformatics workflow in Coretex, I am getting the following message even though data seems to be in order:
“Failed to determine which column contains sampleIDs/names...” and then the list of available names, but I am using one from the list.

I am trying to run a microbiome sequencing task in Coretex, and I have used standard microbiome sequencing data in .fastq.gz format. Run should have been successful but it is failing every time.

The code for the data import I use is, what is missing:

def main() -> None:
    taskRun: TaskRun[CustomDataset] = currentTaskRun()

    dataset = taskRun.dataset
    dataset.download()

    outputDir = folder_manager.createTempFolder("import_output")

    multiplexedFastqs = ctx_qiime2.getFastqMPSamples(dataset)
    if len(multiplexedFastqs) > 0:
        importMultiplexed(multiplexedFastqs, taskRun, outputDir)
    else:
        importDemultiplexed(SequenceDataset.decode(dataset.encode()), taskRun, outputDir)