I am attempting to subcluster groups within a certain analysis (FlowSOM). I would like to remove 30 subgroups to 1 new analysis but I seem to be doing something wrong.
I first tried to just use 1 cluster
newsubset<-FlowSOMSubset(fsom, GetMetaclusters(fsom, meta=fsom$metacluster == 6))
This indeed subsetted only cluster 6
As i need a string of different clusters I tried to select (2) different subclusters and use these:
newsubset<-FlowSOMSubset(fsom, GetMetaclusters(fsom, meta=fsom$metacluster == c('6','9')))
This indeed subsetted cluster 6 and 9
However, adding more numbers e.g.
newsubset <-FlowSOMSubset(fsom, GetMetaclusters(fsom, meta=fsom$metacluster == c('6','9','10')))
subsetted only cluster 6?
Now I am at a loss on how to make the string to add more clusters.
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