running into error when trying to upload the app with
rsconnect::deployApp()
.
<code>library(shiny)
library(tidyverse)
library(dplyr)
library(ggplot2)
library(ggVennDiagram)
library(clusterProfiler)
library(org.Mm.eg.db)
library(DOSE)
library(rsconnect)
library(BiocManager)
options(repos = BiocManager::repositories())
# library(rsconnect)
rsconnect::deployApp('C:/Users/phampe/OneDrive - Oregon Health & Science University/Desktop/shiny_app/')
# rsconnect::deployApp(appDir = '~/../Desktop/shiny_app')
# rsconnect::showLogs('~/../Desktop/shiny_app/')
############
lowest_value = 2.225074e-308
# setwd("C:/Users/phampe/OneDrive - Oregon Health & Science University/Desktop/shiny_app/")
testing_file = read.table("liver_regneration_genes_diff_exp_GSEA.csv", sep = ",", header = TRUE)
file_1 = testing_file[order(testing_file$pvalue, decreasing = FALSE), ]
file_2 = read.table("both-vs-oct.diffexp.tsv", header = TRUE)
file_3 = read.table("Il6-vs-ctl.diffexp.tsv", header = TRUE)
file_4 = read.table("il6_KO_PDAC-vs-SHAM.qvalue_diffexp.tsv", header = TRUE)
file_4 = file_4[-c(8,9)]
file_5 = read.table("OE_KPC-vs-KPC.qvalue_diffexp.tsv", header = TRUE)
file_5[file_5 == 0] = 2.225074e-308
file_5 = file_5[-c(8,9)]
file_6 = read.table("pdac_adlib-vs-sham_adlib.diffexp_gsea.tsv", header = TRUE)
file_7 = read.table("pdac_fast-vs-sham_fast.diffexp_gsea.tsv", header = TRUE)
</code>
<code>library(shiny)
library(tidyverse)
library(dplyr)
library(ggplot2)
library(ggVennDiagram)
library(clusterProfiler)
library(org.Mm.eg.db)
library(DOSE)
library(rsconnect)
library(BiocManager)
options(repos = BiocManager::repositories())
# library(rsconnect)
rsconnect::deployApp('C:/Users/phampe/OneDrive - Oregon Health & Science University/Desktop/shiny_app/')
# rsconnect::deployApp(appDir = '~/../Desktop/shiny_app')
# rsconnect::showLogs('~/../Desktop/shiny_app/')
############
lowest_value = 2.225074e-308
# setwd("C:/Users/phampe/OneDrive - Oregon Health & Science University/Desktop/shiny_app/")
testing_file = read.table("liver_regneration_genes_diff_exp_GSEA.csv", sep = ",", header = TRUE)
file_1 = testing_file[order(testing_file$pvalue, decreasing = FALSE), ]
file_2 = read.table("both-vs-oct.diffexp.tsv", header = TRUE)
file_3 = read.table("Il6-vs-ctl.diffexp.tsv", header = TRUE)
file_4 = read.table("il6_KO_PDAC-vs-SHAM.qvalue_diffexp.tsv", header = TRUE)
file_4 = file_4[-c(8,9)]
file_5 = read.table("OE_KPC-vs-KPC.qvalue_diffexp.tsv", header = TRUE)
file_5[file_5 == 0] = 2.225074e-308
file_5 = file_5[-c(8,9)]
file_6 = read.table("pdac_adlib-vs-sham_adlib.diffexp_gsea.tsv", header = TRUE)
file_7 = read.table("pdac_fast-vs-sham_fast.diffexp_gsea.tsv", header = TRUE)
</code>
library(shiny)
library(tidyverse)
library(dplyr)
library(ggplot2)
library(ggVennDiagram)
library(clusterProfiler)
library(org.Mm.eg.db)
library(DOSE)
library(rsconnect)
library(BiocManager)
options(repos = BiocManager::repositories())
# library(rsconnect)
rsconnect::deployApp('C:/Users/phampe/OneDrive - Oregon Health & Science University/Desktop/shiny_app/')
# rsconnect::deployApp(appDir = '~/../Desktop/shiny_app')
# rsconnect::showLogs('~/../Desktop/shiny_app/')
############
lowest_value = 2.225074e-308
# setwd("C:/Users/phampe/OneDrive - Oregon Health & Science University/Desktop/shiny_app/")
testing_file = read.table("liver_regneration_genes_diff_exp_GSEA.csv", sep = ",", header = TRUE)
file_1 = testing_file[order(testing_file$pvalue, decreasing = FALSE), ]
file_2 = read.table("both-vs-oct.diffexp.tsv", header = TRUE)
file_3 = read.table("Il6-vs-ctl.diffexp.tsv", header = TRUE)
file_4 = read.table("il6_KO_PDAC-vs-SHAM.qvalue_diffexp.tsv", header = TRUE)
file_4 = file_4[-c(8,9)]
file_5 = read.table("OE_KPC-vs-KPC.qvalue_diffexp.tsv", header = TRUE)
file_5[file_5 == 0] = 2.225074e-308
file_5 = file_5[-c(8,9)]
file_6 = read.table("pdac_adlib-vs-sham_adlib.diffexp_gsea.tsv", header = TRUE)
file_7 = read.table("pdac_fast-vs-sham_fast.diffexp_gsea.tsv", header = TRUE)
Here is my error whenever i run the shiny app in the logs.
<code>Bioconductor version '3.16' is out-of-date; the current release version '3.19'
is available with R version '4.4'; see https://bioconductor.org/install
Error in rsconnect::deployApp("C:/Users/phampe/OneDrive University/Desktop/shiny_app/") : `appDir`, "C:/Users/phampe/OneDrive - University/Desktop/shiny_app/", does not exist.
Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Shiny application exiting ...
</code>
<code>Bioconductor version '3.16' is out-of-date; the current release version '3.19'
is available with R version '4.4'; see https://bioconductor.org/install
Error in rsconnect::deployApp("C:/Users/phampe/OneDrive University/Desktop/shiny_app/") : `appDir`, "C:/Users/phampe/OneDrive - University/Desktop/shiny_app/", does not exist.
Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Shiny application exiting ...
</code>
Bioconductor version '3.16' is out-of-date; the current release version '3.19'
is available with R version '4.4'; see https://bioconductor.org/install
Error in rsconnect::deployApp("C:/Users/phampe/OneDrive University/Desktop/shiny_app/") : `appDir`, "C:/Users/phampe/OneDrive - University/Desktop/shiny_app/", does not exist.
Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Shiny application exiting ...
I’ve tried hashing out my ‘getwd()’ and changing my directory
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