So i have so far two nextflow script first one is parse_annotation.nf
which generates a .csv
file then that goes as input for sample_parse.nf
. Now so far i have figured out from examples how to run as standalone workflow.
Now my goal is put them together such that
this runs parse_annotation.nf
first and then subsequently its output will be taken as input for sample_parse.nf
which will generate output which i have tested the python script it works fine.
Any template example with DSL-2 format would be really helpful and appreciated