I’m trying to run a python script in a conda environment. Im using a ubuntu(Ubuntu 20.04.6 LTS) machine through SSH. I’m running colmap on a dataset and getting the following error:
==== running: colmap feature_extractor --database_path data/N3V/coffee_martini/tmp/database.db --image_path data/N3V/coffee_martini/tmp/images
QFactoryLoader::QFactoryLoader() checking directory path "/home/ubuntu/anaconda3/envs/gaussian_splatting/bin/platforms" ...
qt.qpa.plugin: Could not find the Qt platform plugin "offscreen" in ""
This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem.
*** Aborted at 1718876096 (unix time) try "date -d @1718876096" if you are using GNU date ***
PC: @ 0x0 (unknown)
*** SIGABRT (@0x3e80018404b) received by PID 1589323 (TID 0x7f14e59ebf80) from PID 1589323; stack trace: ***
@ 0x7f14eb0d7197 google::(anonymous namespace)::FailureSignalHandler()
@ 0x7f14e9802420 (unknown)
@ 0x7f14e914800b gsignal
@ 0x7f14e9127859 abort
@ 0x7f14e98a135b QMessageLogger::fatal()
@ 0x7f14e9d5f799 QGuiApplicationPrivate::createPlatformIntegration()
@ 0x7f14e9d5fb6f QGuiApplicationPrivate::createEventDispatcher()
@ 0x7f14e99beb62 QCoreApplicationPrivate::init()
@ 0x7f14e9d601e1 QGuiApplicationPrivate::init()
@ 0x7f14ea1e6bc5 QApplicationPrivate::init()
@ 0x55bbce67b975 colmap::RunFeatureExtractor()
@ 0x55bbce6641a0 main
@ 0x7f14e9129083 __libc_start_main
@ 0x55bbce667e39 (unknown)
Aborted (core dumped)
FATAL: command failed
The packages installed in conda env are following :
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_kmp_llvm conda-forge
addict 2.4.0 pypi_0 pypi
ansi2html 1.9.1 pypi_0 pypi
antlr4-python3-runtime 4.9.3 pypi_0 pypi
attrs 23.1.0 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
blas 1.0 mkl
boost-cpp 1.74.0 h312852a_4 conda-forge
brotli-python 1.0.9 py37hd23a5d3_7 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
ca-certificates 2024.6.2 hbcca054_0 conda-forge
ceres-solver 2.1.0 h2ea6fbf_2 conda-forge
certifi 2024.6.2 pyhd8ed1ab_0 conda-forge
charset-normalizer 3.3.0 pyhd8ed1ab_0 conda-forge
click 8.1.7 pypi_0 pypi
colmap 3.7 h06efa00_2 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
comm 0.1.4 pypi_0 pypi
configargparse 1.7 pypi_0 pypi
cudatoolkit 11.6.2 hfc3e2af_12 conda-forge
cycler 0.11.0 pypi_0 pypi
dash 2.14.2 pypi_0 pypi
dash-core-components 2.0.0 pypi_0 pypi
dash-html-components 2.0.0 pypi_0 pypi
dash-table 5.0.0 pypi_0 pypi
dbus 1.13.6 h48d8840_2 conda-forge
decorator 5.1.1 pypi_0 pypi
diff-gaussian-rasterization 0.0.0 pypi_0 pypi
eigen 3.4.0 h00ab1b0_0 conda-forge
expat 2.6.2 h59595ed_0 conda-forge
fastjsonschema 2.19.0 pypi_0 pypi
ffmpeg 4.3 hf484d3e_0 pytorch
flann 1.9.1 h848e4f1_1007 conda-forge
flask 2.2.5 pypi_0 pypi
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonttools 4.38.0 pypi_0 pypi
freeimage 3.18.0 h530e30e_10 conda-forge
freetype 2.12.1 h267a509_2 conda-forge
gettext 0.22.5 h59595ed_2 conda-forge
gettext-tools 0.22.5 h59595ed_2 conda-forge
gflags 2.2.2 he1b5a44_1004 conda-forge
glew 2.1.0 h9c3ff4c_2 conda-forge
glib 2.68.4 h9c3ff4c_0 conda-forge
glib-tools 2.68.4 h9c3ff4c_0 conda-forge
glog 0.6.0 h6f12383_0 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
gnutls 3.6.13 h85f3911_1 conda-forge
gst-plugins-base 1.18.4 h29181c9_0 conda-forge
gstreamer 1.18.5 h76c114f_0 conda-forge
hdf5 1.10.5 nompi_h5b725eb_1114 conda-forge
icu 68.2 h9c3ff4c_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imagesize 1.4.1 pypi_0 pypi
imath 3.1.6 h6239696_1 conda-forge
importlib-metadata 6.7.0 pypi_0 pypi
importlib-resources 5.12.0 pypi_0 pypi
ipython 7.34.0 pypi_0 pypi
ipywidgets 8.1.1 pypi_0 pypi
itsdangerous 2.1.2 pypi_0 pypi
jedi 0.19.1 pypi_0 pypi
jinja2 3.1.2 pypi_0 pypi
joblib 1.3.2 pypi_0 pypi
jpeg 9e h0b41bf4_3 conda-forge
jsonschema 4.17.3 pypi_0 pypi
jupyter-core 4.12.0 pypi_0 pypi
jupyterlab-widgets 3.0.9 pypi_0 pypi
jxrlib 1.1 hd590300_3 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.5 pypi_0 pypi
kornia 0.6.12 pypi_0 pypi
krb5 1.19.3 h3790be6_0 conda-forge
lame 3.100 h166bdaf_1003 conda-forge
lcms2 2.14 h6ed2654_0 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libasprintf 0.22.5 h661eb56_2 conda-forge
libasprintf-devel 0.22.5 h661eb56_2 conda-forge
libblas 3.9.0 12_linux64_mkl conda-forge
libcblas 3.9.0 12_linux64_mkl conda-forge
libclang 11.1.0 default_ha53f305_1 conda-forge
libdeflate 1.14 h166bdaf_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libevent 2.1.10 h9b69904_4 conda-forge
libexpat 2.6.2 h59595ed_0 conda-forge
libffi 3.3 h58526e2_2 conda-forge
libgcc-ng 13.2.0 h807b86a_2 conda-forge
libgettextpo 0.22.5 h59595ed_2 conda-forge
libgettextpo-devel 0.22.5 h59595ed_2 conda-forge
libgfortran-ng 13.2.0 h69a702a_8 conda-forge
libgfortran5 13.2.0 h3d2ce59_8 conda-forge
libglib 2.68.4 h3e27bee_0 conda-forge
libglu 9.0.0 he1b5a44_1001 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
liblapack 3.9.0 12_linux64_mkl conda-forge
libllvm11 11.1.0 he0ac6c6_5 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
libpq 13.8 hd77ab85_0 conda-forge
libraw 0.20.2 h9772cbc_2 conda-forge
libsqlite 3.43.2 h2797004_0 conda-forge
libstdcxx-ng 13.2.0 h7e041cc_2 conda-forge
libtiff 4.4.0 h82bc61c_5 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libwebp-base 1.3.2 hd590300_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxkbcommon 1.0.3 he3ba5ed_0 conda-forge
libxml2 2.9.12 h72842e0_0 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
llvm-openmp 17.0.2 h4dfa4b3_0 conda-forge
markupsafe 2.1.3 pypi_0 pypi
matplotlib 3.5.3 pypi_0 pypi
matplotlib-inline 0.1.6 pypi_0 pypi
metis 5.1.0 h59595ed_1007 conda-forge
mkl 2021.4.0 h8d4b97c_729 conda-forge
mkl-service 2.4.0 py37h402132d_0 conda-forge
mkl_fft 1.3.1 py37h3e078e5_1 conda-forge
mkl_random 1.2.2 py37h219a48f_0 conda-forge
mpfr 4.2.1 h9458935_0 conda-forge
mysql-common 8.0.32 h14678bc_0 conda-forge
mysql-libs 8.0.32 h54cf53e_0 conda-forge
nbformat 5.5.0 pypi_0 pypi
ncurses 6.4 hcb278e6_0 conda-forge
nest-asyncio 1.5.8 pypi_0 pypi
nettle 3.6 he412f7d_0 conda-forge
nspr 4.35 h27087fc_0 conda-forge
nss 3.94 h1d7d5a4_0 conda-forge
numpy 1.21.5 py37h6c91a56_3
numpy-base 1.21.5 py37ha15fc14_3
omegaconf 2.3.0 pypi_0 pypi
open3d 0.16.0 pypi_0 pypi
opencv-python 4.9.0.80 pypi_0 pypi
openexr 3.1.5 h0cdce71_2 conda-forge
openh264 2.1.1 h780b84a_0 conda-forge
openjpeg 2.5.0 h7d73246_1 conda-forge
openssl 1.1.1w hd590300_0 conda-forge
packaging 23.2 pypi_0 pypi
pandas 1.3.5 pypi_0 pypi
parso 0.8.3 pypi_0 pypi
pcre 8.45 h9c3ff4c_0 conda-forge
pexpect 4.9.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 9.2.0 py37h850a105_2 conda-forge
pip 22.3.1 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pypi_0 pypi
plotly 5.18.0 pypi_0 pypi
plyfile 0.8.1 pyhd8ed1ab_0 conda-forge
pointops2 1.0 pypi_0 pypi
prompt-toolkit 3.0.43 pypi_0 pypi
psutil 5.9.8 pypi_0 pypi
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pypi_0 pypi
py-cpuinfo 9.0.0 pypi_0 pypi
pygments 2.17.2 pypi_0 pypi
pyparsing 3.1.1 pypi_0 pypi
pyquaternion 0.9.9 pypi_0 pypi
pyrsistent 0.19.3 pypi_0 pypi
pysocks 1.7.1 py37h89c1867_5 conda-forge
python 3.7.13 haa1d7c7_1
python-dateutil 2.8.2 pypi_0 pypi
python_abi 3.7 2_cp37m conda-forge
pytorch 1.12.1 py3.7_cuda11.6_cudnn8.3.2_0 pytorch
pytorch-mutex 1.0 cuda pytorch
pytz 2023.3.post1 pypi_0 pypi
pyyaml 6.0.1 pypi_0 pypi
qt 5.12.9 hda022c4_4 conda-forge
readline 8.2 h8228510_1 conda-forge
requests 2.31.0 pyhd8ed1ab_0 conda-forge
retrying 1.3.4 pypi_0 pypi
scikit-learn 1.0.2 pypi_0 pypi
scipy 1.7.3 pypi_0 pypi
seaborn 0.12.2 pypi_0 pypi
setuptools 68.2.2 pyhd8ed1ab_0 conda-forge
simple-knn 0.0.0 pypi_0 pypi
six 1.16.0 pyh6c4a22f_0 conda-forge
sqlite 3.43.2 h2c6b66d_0 conda-forge
suitesparse 5.10.1 h9e50725_1 conda-forge
tbb 2021.7.0 h924138e_0 conda-forge
tenacity 8.2.3 pypi_0 pypi
threadpoolctl 3.1.0 pypi_0 pypi
tk 8.6.13 h2797004_0 conda-forge
torchaudio 0.12.1 py37_cu116 pytorch
torchmetrics 0.11.4 pypi_0 pypi
torchvision 0.13.1 py37_cu116 pytorch
tqdm 4.66.1 pyhd8ed1ab_0 conda-forge
traitlets 5.9.0 pypi_0 pypi
typing_extensions 4.7.1 pyha770c72_0 conda-forge
ultralytics 8.0.145 pypi_0 pypi
urllib3 2.0.6 pyhd8ed1ab_0 conda-forge
vlfeat 0.9.21 hd590300_1 conda-forge
wcwidth 0.2.12 pypi_0 pypi
werkzeug 2.2.3 pypi_0 pypi
wheel 0.41.2 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.9 pypi_0 pypi
xorg-fixesproto 5.0 h7f98852_1002 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.1.1 hd590300_0 conda-forge
xorg-libsm 1.2.4 h7391055_0 conda-forge
xorg-libx11 1.8.4 h0b41bf4_0 conda-forge
xorg-libxau 1.0.11 hd590300_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h0b41bf4_2 conda-forge
xorg-libxfixes 5.0.3 h7f98852_1004 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zipp 3.15.0 pypi_0 pypi
zlib 1.2.13 hd590300_5 conda-forge
zstd 1.5.5 hfc55251_0 conda-forge
I have tried multiple solution such as setting **export QT_QPA_PLATFORM=offscreen
** and installing packages like **libxcb-xinerama0 , libxcb-cursor0 **
None of them works.