16-minute delay in FastAPI with SQLAlchemy and connection pooling

I’m experiencing an issue with my FastAPI backend where I use SQLAlchemy for database connection pooling. Frequently, I encounter a 16-minute delay when hitting an API endpoint, especially under concurrent requests. It seems that requests sometimes hang for exactly 16 minutes before responding. This delay occurs whether I use create_engine or create_async_engine for the connection pool.

Here’s my connection pool configuration and the relevant code:

engine = create_async_engine(
    URL,
    echo_pool=True,
    echo=False,
    poolclass=AsyncAdaptedQueuePool,
    pool_pre_ping=True,
    pool_size=64,
    max_overflow=64,
    pool_timeout=3,
    pool_recycle=3600
)

SessionLocal = sessionmaker(
    autocommit=False,
    autoflush=False,
    class_=AsyncSession,
    bind=engine,
    expire_on_commit=False,
)

async def get_db_session() -> AsyncSession:
    async with SessionLocal() as session:
        logger.debug(
            f"pid:{os.getpid()} | {session.get_bind().pool.status()} | {session.is_active} {session._is_asyncio}")
        yield session

I’m trying to understand whether this 16-minute delay is caused by SQLAlchemy or if it’s happening at another step, as it significantly affects the application’s performance.

more details:

SessionLocal = sessionmaker(
    autocommit=False,
    autoflush=False,
    class_=AsyncSession,
    bind=engine,
    expire_on_commit=False,
)

async def get_db_session() -> AsyncSession:
    async with SessionLocal() as session:
        logger.debug(
            f"pid:{os.getpid()} | {session.get_bind().pool.status()} | {session.is_active} {session._is_asyncio}")
        yield session

SessionDep = Annotated[AsyncSession, Depends(get_db_session)]

@router.get("", response_model=ResponseData)
@exception_handler
async def read_chat(session: SessionDep, current_user: CurrentUser, customer_id: int = None, page: int = 0, page_size: int = 10) -> Any:
    """
    Retrieve chats
    """
    chats = await crud_chat.get_user_chats(user_id=current_user.id, db_session=session, page=page-1, page_size=page_size)
    router_ids = list(set([chat.router_id for chat in chats]))
    customers = await crud_customer.get_customer_by_router_id(router_ids=router_ids, db_session=session)
    router_id_to_name = {customer.router_id: customer.name for customer in customers}
    router_id_to_avatar = {customer.router_id: customer.avatar for customer in customers}
    total_count = await crud_chat.get_user_chats_count(user_id=current_user.id, db_session=session)
    
    res = []
    for chat in chats:
        chat = chat.dict()
        chat["customer_name"] = router_id_to_name.get(chat["router_id"])
        chat["avatar"] = router_id_to_avatar.get(chat["router_id"])
        res.append(chat)

    return ResponseData(
        data={"chats": res,
              "count": len(chats),
              "total_count": total_count}
    )
    async def get_user_chats(self, user_id: int, db_session: AsyncSession = None, page: int = 0,
                             page_size: int = 10):
        async with get_db_session() if db_session is None else db_session as session:
            chats = await session.execute(
                select(Chat).where(Chat.uid == user_id).order_by(desc(Chat.ctime)).offset(page * page_size).limit(
                    page_size))
            return chats.scalars().all()


    async def get_customer_by_router_id(self, router_ids: list[int], db_session: AsyncSession = None):
        async with get_db_session() if db_session is None else db_session as session:
            customers = await session.execute(select(Customer).where(Customer.router_id.in_(router_ids)))
            return customers.scalars().all()


    async def get_user_chats_count(self, user_id: int, db_session: AsyncSession = None):
        async with get_db_session() if db_session is None else db_session as session:
            response = await session.execute(
                select(func.count()).select_from(Chat).where(Chat.uid == user_id))
            return response.scalar_one_or_none()

more log:

INFO:     2024-09-12 09:38:48 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:59262 - "GET http://www.dev.ai4x.cloud:32494/selling/api/v1/chats?page=1&page_size=10 HTTP/1.1" 200 OK - start:2024-09-12 09:38:48.085971 - duration:0.121s
DEBUG:    2024-09-12 10:10:24 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -63 Current Checked out connections: 0 | True True
DEBUG:    2024-09-12 10:10:27 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 0 Current Overflow: -63 Current Checked out connections: 1 | True True
INFO:     2024-09-12 10:10:27 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:57016 - "GET http://www.dev.ai4x.cloud:32494/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:10:27.216939 - duration:0.072s
DEBUG:    2024-09-12 10:11:55 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -62 Current Checked out connections: 1 | True True
INFO:     2024-09-12 10:11:55 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:59876 - "GET http://www.dev.ai4x.cloud:32494/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:11:55.358777 - duration:0.039s
DEBUG:    2024-09-12 10:12:47 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -62 Current Checked out connections: 1 | True True
INFO:     2024-09-12 10:12:47 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:35564 - "GET http://www.dev.ai4x.cloud:32494/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:12:47.175676 - duration:0.056s
DEBUG:    2024-09-12 10:13:16 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -62 Current Checked out connections: 1 | True True
DEBUG:    2024-09-12 10:13:16 - sellingexpert.api.routes.login::login_wx_openid::61 - login_wx_openid api: 0b1RIG000kR9OS1U4w300BqHYp2RIG0d|https://api.weixin.qq.com/sns/jscode2session?appid=wx07a78f2707c84c7c&secret=7232404fad846751730e1c9bba5ecdb7&js_code=0b1RIG000kR9OS1U4w300BqHYp2RIG0d&grant_type=authorization_code
DEBUG:    2024-09-12 10:13:16 - sellingexpert.api.routes.login::login_wx_openid::63 - login_wx_openid weixin http get start
[12/Sep/2024 10:13:16] INFO - HTTP Request: GET https://api.weixin.qq.com/sns/jscode2session?appid=wx07a78f2707c84c7c&secret=7232404fad846751730e1c9bba5ecdb7&js_code=0b1RIG000kR9OS1U4w300BqHYp2RIG0d&grant_type=authorization_code "HTTP/1.1 200 OK"
DEBUG:    2024-09-12 10:13:16 - sellingexpert.api.routes.login::login_wx_openid::65 - login_wx_openid weixin http get end: 0b1RIG000kR9OS1U4w300BqHYp2RIG0d|https://api.weixin.qq.com/sns/jscode2session?appid=wx07a78f2707c84c7c&secret=7232404fad846751730e1c9bba5ecdb7&js_code=0b1RIG000kR9OS1U4w300BqHYp2RIG0d&grant_type=authorization_code|<Response [200 OK]>
DEBUG:    2024-09-12 10:13:16 - sellingexpert.api.routes.login::login_wx_openid::75 - crud.get_user_by_openid start:0b1RIG000kR9OS1U4w300BqHYp2RIG0d|{'session_key': 'AGPAK8UlXBuD08iT7ZWGWQ==', 'openid': 'o1nWj5I8EqZTz9BY70LHThW9z1Yo'}
DEBUG:    2024-09-12 10:13:16 - sellingexpert.api.routes.login::login_wx_openid::77 - crud.get_user_by_openid end:0b1RIG000kR9OS1U4w300BqHYp2RIG0d|role='normal' is_active=True group_id=1 is_valid=True id=1000000052 openid='o1nWj5I8EqZTz9BY70LHThW9z1Yo' name='llun' avatar='https://www.ai4x.cloud:32494/chatbot-test/avatar/user/object-1726043828974142787.jpg' level_id=1 hashed_password='$2b$12$w16ImxedF2H8szonjHt07ejHXDjwMtxwe0.aI62mkd4kV9ParQJvG'
DEBUG:    2024-09-12 10:13:16 - sellingexpert.api.routes.login::login_wx_openid::91 - create_access_token start: 0b1RIG000kR9OS1U4w300BqHYp2RIG0d|1000000052
DEBUG:    2024-09-12 10:13:16 - sellingexpert.api.routes.login::login_wx_openid::93 - create_access_token end: 0b1RIG000kR9OS1U4w300BqHYp2RIG0d|1000000052|eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJleHAiOjE3NjIzOTUxOTYsInN1YiI6IjEwMDAwMDAwNTIifQ.bnlfWDxkkM570VNdL674vzz46Iw1cdgfrcHt2sv5z-0
INFO:     2024-09-12 10:13:16 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:45742 - "POST http://www.dev.ai4x.cloud:32494/selling/api/v1/login/wx-openid HTTP/1.1" 200 OK - start:2024-09-12 10:13:16.409646 - duration:0.320s
DEBUG:    2024-09-12 10:13:16 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -62 Current Checked out connections: 1 | True True
INFO:     2024-09-12 10:13:16 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:45742 - "GET http://www.dev.ai4x.cloud:32494/selling/api/v1/user/refresh_userinfo/ HTTP/1.1" 200 OK - start:2024-09-12 10:13:16.801077 - duration:0.035s
DEBUG:    2024-09-12 10:13:17 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -62 Current Checked out connections: 1 | True True
INFO:     2024-09-12 10:13:17 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:45742 - "GET http://www.dev.ai4x.cloud:32494/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:13:17.851945 - duration:0.053s
DEBUG:    2024-09-12 10:13:56 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -62 Current Checked out connections: 1 | True True
INFO:     2024-09-12 10:13:56 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:50362 - "GET http://www.dev.ai4x.cloud:32494/selling/api/v1/chats?page=1&page_size=10 HTTP/1.1" 200 OK - start:2024-09-12 10:13:56.258594 - duration:0.110s
DEBUG:    2024-09-12 10:25:01 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -62 Current Checked out connections: 1 | True True
DEBUG:    2024-09-12 10:25:09 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 0 Current Overflow: -62 Current Checked out connections: 2 | True True
INFO:     2024-09-12 10:25:09 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:54828 - "GET http://www.dev.ai4x.cloud:32494/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:25:09.060476 - duration:0.075s
DEBUG:    2024-09-12 10:25:23 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -61 Current Checked out connections: 2 | True True
INFO:     2024-09-12 10:25:23 - sellingexpert.utils.response_util::log_response::155 - 172.22.121.60:31551 - "GET http://172.22.121.60:32100/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:25:23.056793 - duration:0.054s
DEBUG:    2024-09-12 10:25:24 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -61 Current Checked out connections: 2 | True True
INFO:     2024-09-12 10:25:24 - sellingexpert.utils.response_util::log_response::155 - 172.22.121.60:31551 - "GET http://172.22.121.60:32100/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:25:24.471383 - duration:0.055s
DEBUG:    2024-09-12 10:25:25 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -61 Current Checked out connections: 2 | True True
INFO:     2024-09-12 10:25:25 - sellingexpert.utils.response_util::log_response::155 - 172.22.121.60:31551 - "GET http://172.22.121.60:32100/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:25:25.383615 - duration:0.053s
DEBUG:    2024-09-12 10:25:26 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -61 Current Checked out connections: 2 | True True
INFO:     2024-09-12 10:25:26 - sellingexpert.utils.response_util::log_response::155 - 172.22.121.60:31551 - "GET http://172.22.121.60:32100/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:25:26.408128 - duration:0.053s
DEBUG:    2024-09-12 10:25:27 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -61 Current Checked out connections: 2 | True True
INFO:     2024-09-12 10:25:27 - sellingexpert.utils.response_util::log_response::155 - 172.22.121.60:31551 - "GET http://172.22.121.60:32100/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:25:27.185809 - duration:0.053s
DEBUG:    2024-09-12 10:25:31 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -61 Current Checked out connections: 2 | True True
INFO:     2024-09-12 10:25:31 - sellingexpert.utils.response_util::log_response::155 - 172.22.121.60:31551 - "GET http://172.22.121.60:32100/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:25:31.073784 - duration:0.052s
DEBUG:    2024-09-12 10:25:32 - sellingexpert.db.db::get_db_session::25 - pid:1 | Pool size: 64  Connections in pool: 1 Current Overflow: -61 Current Checked out connections: 2 | True True
INFO:     2024-09-12 10:25:32 - sellingexpert.utils.response_util::log_response::155 - 172.22.121.60:31551 - "GET http://172.22.121.60:32100/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:25:32.070399 - duration:0.055s
2024-09-12 10:26:23,329 INFO sqlalchemy.pool.impl.AsyncAdaptedQueuePool Disconnection detected on checkout, invalidating all pooled connections prior to current timestamp (reason: InvalidatePoolError())
[12/Sep/2024 10:26:23] INFO - Disconnection detected on checkout, invalidating all pooled connections prior to current timestamp (reason: InvalidatePoolError())
2024-09-12 10:26:23,330 INFO sqlalchemy.pool.impl.AsyncAdaptedQueuePool Invalidate connection <AdaptedConnection <aiomysql.connection.Connection object at 0x70568f73edd0>> (reason: InvalidatePoolError:())
[12/Sep/2024 10:26:23] INFO - Invalidate connection <AdaptedConnection <aiomysql.connection.Connection object at 0x70568f73edd0>> (reason: InvalidatePoolError:())
INFO:     2024-09-12 10:26:23 - sellingexpert.utils.response_util::log_response::155 - 10.233.79.115:37050 - "GET http://www.dev.ai4x.cloud:32494/selling/api/v1/customer/ HTTP/1.1" 200 OK - start:2024-09-12 10:10:24.236866 - duration:959.201s

5

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